The long-range transport of bioaerosols takes place in the free troposphere and has lately gained a renewed interest in both environmental and health-related disciplines. Sampling free troposphere bioaerosols has been, however, historically challenging and requires of expensive and complex facilities. We analysed different bacterial bioaerosols studies carried out by sequencing of the 16S rRNA gene, available from the literature. The dataset was compared with bacterial bioaerosols present in rain and dry deposition passively collected at highelevation sites in Sierra Nevada along a set of sampling periods lasting 3 years. Up to 65% of OTUs and 82% of the bacterial genera were shared between wet and dry bioaerosols. Interestingly, only Oxalobacteraceae were notably more abundant in wet deposition, with Noviherbaspirillum and Massilia as dominant genera. We demonstrated that the bacterial composition of bioaerosols collected by passive natural deposition at high-elevated mountains were closer to the bacterial microbiome from the free troposphere. Interestingly, the meta-analysis showed a different bacterial composition and community structure in bacterial bioaerosols collected at lowelevated areas, over the open ocean, or during desert dust events. Since the boundary layer can be easily reached in high mountain areas, and the local landscape is surrounded by rocks and meadows, alpine stations are potentially optimal research sites with reduced influence of surface aerosols, minimizing local contaminations. Consequently, sampling alpine bioaerosols could be a good proxy for bioaerosols monitoring, long-range dispersal studies, and the dynamic characterization of the free troposphere microbiome.